PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003849.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 240aa    MW: 26200.8 Da    PI: 8.3992
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003849.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.64e-2841081100
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +l+l++a p+  r+++++sl+yeA+ r+  P++G+vg+++++ 
  HL.SW.v1.0.G003849.1   4 SCNGCRVLRKGCSDDCAIRPCLqwiksPDSQAQATLFLAKFYGRTGLLNLINAGPQYLRPAVFKSLLYEACGRIVSPINGSVGLLWTGD 92 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelallkee 100
                           ++ +q+++e++l++++
  HL.SW.v1.0.G003849.1  93 WDKCQAAVEAVLAGAP 108
                           *********9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0863109IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-224104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSDDCA IRPCLQWIKS PDSQAQATLF LAKFYGRTGL LNLINAGPQY  60
LRPAVFKSLL YEACGRIVSP INGSVGLLWT GDWDKCQAAV EAVLAGAPIK VETEEHALDS  120
KQFAHLKSPC AVDIRHVTKD DVVSDSNPKH MSQPKPRNRF KRTATGQKTL LGGGSNLGDL  180
TRFLNPGHEY WWPRLLGNGS TSAGEDVESM FSVESVEPKE PNKDQRGEVR LELSLGFAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103761.17e-96hypothetical protein L484_014650
SwissprotQ9M8863e-65LBD41_ARATH; LOB domain-containing protein 41
TrEMBLW9RM278e-96W9RM27_9R
STRINGVIT_01s0011g03540.t014e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-66LOB domain-containing protein 41